WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F08A8.5.1 Sequence Name  F08A8.5.1
Length (nt)  1449   Chromosome Location  I: 12955325-12958051
Chromosome . Primary Identifier  I Chromosome Location . Start  12955325
Chromosome Location . End  12958051 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F08A8.5.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00008568 F08A8.5 F08A8.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F08A8.5 F08A8.5 1209   I: 12955416-12955505

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F08A8.5.1 12955325 12958051 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon33231   181   I: 12955325-12955505 Caenorhabditis elegans
Exon33232   92   I: 12955561-12955652 Caenorhabditis elegans
Exon33233   79   I: 12955702-12955780 Caenorhabditis elegans
Exon33234   86   I: 12955827-12955912 Caenorhabditis elegans
Exon33237   75   I: 12956227-12956301 Caenorhabditis elegans
Exon33238   104   I: 12956352-12956455 Caenorhabditis elegans
Exon33239   116   I: 12956633-12956748 Caenorhabditis elegans
Exon33240   117   I: 12956805-12956921 Caenorhabditis elegans
Exon33241   164   I: 12957114-12957277 Caenorhabditis elegans
Exon33242   76   I: 12957340-12957415 Caenorhabditis elegans
Exon33243   164   I: 12957461-12957624 Caenorhabditis elegans
Exon33244   195   I: 12957857-12958051 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F08A8.5.1 12955325 12958051 -1

1 Sequence

Length
1449

1 Sequence Ontology Term

Identifier Name Description
transcript