WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00044714 Gene Name  ZK1225.10
Sequence Name  ? ZK1225.10 Organism  Caenorhabditis elegans
Automated Description  Is affected by clk-1 and sir-2.1 based on microarray studies. Is affected by resveratrol based on microarray studies. Biotype  SO:0000336
Genetic Position  Length (nt)  ? 1981
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00044714

Genomics

0 Transcripts

 

Other

0 CDSs

0 RNAi Result

36 Allele

Public Name
gk963849
gk964175
gk963138
WBVar01434252
ttTi39672
WBVar01353881
ttTi39687
WBVar02074587
gk821543
gk555058
gk612845
gk473997
gk443246
gk491923
gk920159
gk440711
gk670249
gk370785
gk386331
WBVar00541803
gk846432
WBVar00541802
gk472082
gk840467
gk863165
gk416527
gk963609
WBVar01429232
gk126639
cxTi9725

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
WBGene00044714 13211826 13213806 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrI_13213807..13214094   288 I: 13213807-13214094 Caenorhabditis elegans

3 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Up-regulated genes (fold change > 1.5) in two CoQ-deficient clk-1 mutant strains (e2519, qm30) compared to wild types N2. Fold-changes of intensities were calculated from the arithmetic mean of gene expression values between experimental and corresponding control group. Fold change >= 1.5 was used as cut-off. WBPaper00045774:clk-1_upregulated
  Genes found to be regulated by low-copy overexpression of sir-2.1 with p < 0.014. N.A. WBPaper00026929:sir-2.1_overexpression_regulated
  Genes found to be regulated in daf-16(mgDf50) by resveratrol treatment with p < 0.01. N.A. WBPaper00026929:Resveratrol_regulated_daf-16

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier
Start End Strand
WBGene00044714 13211826 13213806 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
1981

1 Sequence Ontology Term