WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T04D3.3a.1 Sequence Name  T04D3.3a.1
Length (nt)  2213   Chromosome Location  I: 13310887-13318716
Chromosome . Primary Identifier  I Chromosome Location . Start  13310887
Chromosome Location . End  13318716 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T04D3.3a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00011433 pde-1 T04D3.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T04D3.3a T04D3.3a 1995   I: 13311093-13311109

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T04D3.3a.1 13310887 13318716 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon34002   223   I: 13310887-13311109 Caenorhabditis elegans
Exon34004   78   I: 13311156-13311233 Caenorhabditis elegans
Exon34006   134   I: 13311545-13311678 Caenorhabditis elegans
Exon34008   107   I: 13311802-13311908 Caenorhabditis elegans
Exon34010   265   I: 13311956-13312220 Caenorhabditis elegans
Exon34012   329   I: 13312893-13313221 Caenorhabditis elegans
Exon34014   496   I: 13313324-13313819 Caenorhabditis elegans
Exon34016   114   I: 13314164-13314277 Caenorhabditis elegans
Exon34019   151   I: 13315858-13316008 Caenorhabditis elegans
Exon34020   148   I: 13318238-13318385 Caenorhabditis elegans
Exon34021   168   I: 13318549-13318716 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T04D3.3a.1 13310887 13318716 -1

1 Sequence

Length
2213

1 Sequence Ontology Term

Identifier Name Description
transcript