WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:T04D3.3a Sequence Name  T04D3.3a
Length (nt)  1995   Chromosome Location  I: 13311093-13311109
Chromosome . Primary Identifier  I Chromosome Location . Start  13311093
Chromosome Location . End  13311109
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T04D3.3a

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE16340 PDE-1, isoform a 74.8 664 Caenorhabditis elegans
 

Other

4 RNAi

WormBase ID
WBRNAi00001209
WBRNAi00052390
WBRNAi00004126
WBRNAi00035138

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:T04D3.3a 13311093 13311109 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00011433 pde-1 T04D3.3 Caenorhabditis elegans

11 Locations


Feature . Primary Identifier
Start End Strand
CDS:T04D3.3a 13311093 13311109 -1
CDS:T04D3.3a 13311156 13311233 -1
CDS:T04D3.3a 13311545 13311678 -1
CDS:T04D3.3a 13311802 13311908 -1
CDS:T04D3.3a 13311956 13312220 -1
CDS:T04D3.3a 13312893 13313221 -1
CDS:T04D3.3a 13313324 13313819 -1
CDS:T04D3.3a 13314164 13314277 -1
CDS:T04D3.3a 13315858 13316008 -1
CDS:T04D3.3a 13318238 13318385 -1
CDS:T04D3.3a 13318549 13318704 -1

1 Sequence

Length
1995

1 Sequence Ontology Term

Identifier Name Description
CDS  

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:T04D3.3a.1 T04D3.3a.1 2213   I: 13310887-13318716