WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T04D3.4a.1 Sequence Name  T04D3.4a.1
Length (nt)  2376   Chromosome Location  I: 13325230-13333513
Chromosome . Primary Identifier  I Chromosome Location . Start  13325230
Chromosome Location . End  13333513 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T04D3.4a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001555 gcy-35 T04D3.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T04D3.4a T04D3.4a 2067   I: 13325362-13325364

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T04D3.4a.1 13325230 13333513 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

17 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon34025   135   I: 13325230-13325364 Caenorhabditis elegans
Exon34026   74   I: 13325620-13325693 Caenorhabditis elegans
Exon34027   208   I: 13326302-13326509 Caenorhabditis elegans
Exon34028   160   I: 13327185-13327344 Caenorhabditis elegans
Exon34030   194   I: 13327607-13327800 Caenorhabditis elegans
Exon34031   102   I: 13327970-13328071 Caenorhabditis elegans
Exon34032   132   I: 13328113-13328244 Caenorhabditis elegans
Exon34033   123   I: 13328697-13328819 Caenorhabditis elegans
Exon34034   110   I: 13328871-13328980 Caenorhabditis elegans
Exon34035   146   I: 13329033-13329178 Caenorhabditis elegans
Exon34045   134   I: 13331618-13331751 Caenorhabditis elegans
Exon34047   106   I: 13331804-13331909 Caenorhabditis elegans
Exon34049   118   I: 13331970-13332087 Caenorhabditis elegans
Exon34051   154   I: 13332375-13332528 Caenorhabditis elegans
Exon34054   79   I: 13332575-13332653 Caenorhabditis elegans
Exon34057   158   I: 13332924-13333081 Caenorhabditis elegans
Exon34062   243   I: 13333271-13333513 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T04D3.4a.1 13325230 13333513 1

1 Sequence

Length
2376

1 Sequence Ontology Term

Identifier Name Description
transcript