WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y40B1A.3a.1 Sequence Name  Y40B1A.3a.1
Length (nt)  1410   Chromosome Location  I: 13349410-13358588
Chromosome . Primary Identifier  I Chromosome Location . Start  13349410
Chromosome Location . End  13358588 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y40B1A.3a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00012734 wac-1.1 Y40B1A.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y40B1A.3a Y40B1A.3a 1410   I: 13349410-13349478

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y40B1A.3a.1 13349410 13358588 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon34105   69   I: 13349410-13349478 Caenorhabditis elegans
Exon34109   239   I: 13353007-13353245 Caenorhabditis elegans
Exon34116   157   I: 13354069-13354225 Caenorhabditis elegans
Exon34118   203   I: 13354277-13354479 Caenorhabditis elegans
Exon34123   183   I: 13355612-13355794 Caenorhabditis elegans
Exon34128   134   I: 13356474-13356607 Caenorhabditis elegans
Exon34133   173   I: 13356736-13356908 Caenorhabditis elegans
Exon34138   138   I: 13357727-13357864 Caenorhabditis elegans
Exon34143   74   I: 13358129-13358202 Caenorhabditis elegans
Exon34144   40   I: 13358549-13358588 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y40B1A.3a.1 13349410 13358588 1

1 Sequence

Length
1410

1 Sequence Ontology Term

Identifier Name Description
transcript