WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:Y40B1A.4 Sequence Name  Y40B1A.4
Length (nt)  1239   Chromosome Location  I: 13360675-13360843
Chromosome . Primary Identifier  I Chromosome Location . Start  13360675
Chromosome Location . End  13360843
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y40B1A.4

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE42686 SPTF-3 47.0 412 Caenorhabditis elegans
 

Other

49 RNAi

WormBase ID
WBRNAi00097786
WBRNAi00106770
WBRNAi00026682
WBRNAi00004607
WBRNAi00056317
WBRNAi00026683
WBRNAi00097787
WBRNAi00106740
WBRNAi00071074
WBRNAi00107543
WBRNAi00036974
WBRNAi00085653
WBRNAi00097784
WBRNAi00112456
WBRNAi00107155
WBRNAi00107420
WBRNAi00107310
WBRNAi00106775
WBRNAi00106753
WBRNAi00106728
WBRNAi00111757
WBRNAi00075439
WBRNAi00104756
WBRNAi00104757
WBRNAi00104760
WBRNAi00104755
WBRNAi00104758
WBRNAi00104759
WBRNAi00104762
WBRNAi00104761

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:Y40B1A.4 13360675 13360843 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00012735 sptf-3 Y40B1A.4 Caenorhabditis elegans

7 Locations


Feature . Primary Identifier
Start End Strand
CDS:Y40B1A.4 13360675 13360843 -1
CDS:Y40B1A.4 13361682 13361828 -1
CDS:Y40B1A.4 13362513 13362673 -1
CDS:Y40B1A.4 13362719 13362816 -1
CDS:Y40B1A.4 13364114 13364459 -1
CDS:Y40B1A.4 13365451 13365606 -1
CDS:Y40B1A.4 13366661 13366822 -1

1 Sequence

Length
1239

1 Sequence Ontology Term

Identifier Name Description
CDS  

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:Y40B1A.4.1 Y40B1A.4.1 1927   I: 13360053-13366888