WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:Y87G2A.3b Sequence Name  Y87G2A.3b
Length (nt)  1446   Chromosome Location  I: 13537135-13537253
Chromosome . Primary Identifier  I Chromosome Location . Start  13537135
Chromosome Location . End  13537253
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y87G2A.3b

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE47833 ATG-4.1, isoform b 54.9 481 Caenorhabditis elegans
 

Other

8 RNAi

WormBase ID
WBRNAi00058606
WBRNAi00037904
WBRNAi00111152
WBRNAi00117011
WBRNAi00092328
WBRNAi00092327
WBRNAi00080464
WBRNAi00099129

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:Y87G2A.3b 13537135 13537253 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00013595 atg-4.1 Y87G2A.3 Caenorhabditis elegans

7 Locations


Feature . Primary Identifier
Start End Strand
CDS:Y87G2A.3b 13537135 13537253 -1
CDS:Y87G2A.3b 13537970 13538596 -1
CDS:Y87G2A.3b 13540329 13540532 -1
CDS:Y87G2A.3b 13541195 13541336 -1
CDS:Y87G2A.3b 13541389 13541444 -1
CDS:Y87G2A.3b 13542047 13542118 -1
CDS:Y87G2A.3b 13542170 13542395 -1

1 Sequence

Length
1446

1 Sequence Ontology Term

Identifier Name Description
CDS  

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:Y87G2A.3b.1 Y87G2A.3b.1 1446   I: 13537135-13542395