WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00201688 Gene Name  Y71A12B.31
Sequence Name  ? Y71A12B.31 Organism  Caenorhabditis elegans
Automated Description  Is affected by ilc-17.1 based on RNA-seq studies. Biotype  SO:0001263
Genetic Position  :± Length (nt)  ? 282
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00201688

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:Y71A12B.31 Y71A12B.31 282   I: 13951771-13952052
 

Other

0 CDSs

0 RNAi Result

13 Allele

Public Name
gk963849
gk964175
gk962681
gk963947
WBVar02066738
gk128127
gk128128
WBVar02122515
WBVar02124533
gk690723
WBVar01948413
WBVar01890859
WBVar01355505

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00201688 13951771 13952052 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrI_13952053..13952160   108 I: 13952053-13952160 Caenorhabditis elegans

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in ilc-17.1(syb5296) comparing to in N2 animals at L4 larva stage. DESeq2, fold change > 2, FDR < 0.05. WBPaper00066594:ilc-17.1(syb5296)_upregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00201688 13951771 13952052 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
282

1 Sequence Ontology Term