WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y71A12B.17b.1 Sequence Name  Y71A12B.17b.1
Length (nt)  3864   Chromosome Location  I: 13983226-13989668
Chromosome . Primary Identifier  I Chromosome Location . Start  13983226
Chromosome Location . End  13989668 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y71A12B.17b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00045058 gadr-5 Y71A12B.17 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y71A12B.17b Y71A12B.17b 2748   I: 13984308-13984326

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y71A12B.17b.1 13983226 13989668 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

14 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon35023   417   I: 13983226-13983642 Caenorhabditis elegans
Exon35024   638   I: 13983689-13984326 Caenorhabditis elegans
Exon35027   204   I: 13984400-13984603 Caenorhabditis elegans
Exon35029   162   I: 13984650-13984811 Caenorhabditis elegans
Exon35031   123   I: 13984863-13984985 Caenorhabditis elegans
Exon35033   117   I: 13985032-13985148 Caenorhabditis elegans
Exon35035   102   I: 13985264-13985365 Caenorhabditis elegans
Exon35037   168   I: 13985408-13985575 Caenorhabditis elegans
Exon35039   125   I: 13985632-13985756 Caenorhabditis elegans
Exon35041   266   I: 13985800-13986065 Caenorhabditis elegans
Exon35043   155   I: 13986116-13986270 Caenorhabditis elegans
Exon35045   307   I: 13986321-13986627 Caenorhabditis elegans
Exon35047   603   I: 13987523-13988125 Caenorhabditis elegans
Exon35049   477   I: 13989192-13989668 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y71A12B.17b.1 13983226 13989668 1

1 Sequence

Length
3864

1 Sequence Ontology Term

Identifier Name Description
transcript