WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C49A1.2a.1 Sequence Name  C49A1.2a.1
Length (nt)  1368   Chromosome Location  I: 14209148-14212501
Chromosome . Primary Identifier  I Chromosome Location . Start  14209148
Chromosome Location . End  14212501 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C49A1.2a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00008185 best-10 C49A1.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C49A1.2a C49A1.2a 1272   I: 14209215-14209362

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C49A1.2a.1 14209148 14212501 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon35422   215   I: 14209148-14209362 Caenorhabditis elegans
Exon35424   158   I: 14209406-14209563 Caenorhabditis elegans
Exon35427   144   I: 14209609-14209752 Caenorhabditis elegans
Exon35428   198   I: 14210060-14210257 Caenorhabditis elegans
Exon35429   110   I: 14210311-14210420 Caenorhabditis elegans
Exon35430   194   I: 14210472-14210665 Caenorhabditis elegans
Exon35431   138   I: 14211835-14211972 Caenorhabditis elegans
Exon35432   125   I: 14212021-14212145 Caenorhabditis elegans
Exon35433   57   I: 14212194-14212250 Caenorhabditis elegans
Exon35434   29   I: 14212473-14212501 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C49A1.2a.1 14209148 14212501 -1

1 Sequence

Length
1368

1 Sequence Ontology Term

Identifier Name Description
transcript