WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00196421 Gene Name  F09C3.7
Sequence Name  ? F09C3.7 Organism  Caenorhabditis elegans
Automated Description  Is affected by ogt-1 based on RNA-seq studies. Is affected by Oligosaccharides based on microarray studies. Biotype  SO:0001263
Genetic Position  :± Length (nt)  ? 48
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00196421

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:F09C3.7 F09C3.7 48   I: 14278781-14278828
 

Other

0 CDSs

0 RNAi Result

6 Allele

Public Name
gk963849
gk964175
gk962681
gk963947
WBVar01915309
otn4832

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00196421 14278781 14278828 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrI_14277654..14278780   1127 I: 14277654-14278780 Caenorhabditis elegans

2 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in ogt-1(ok1474) neuronal cells isolated by FACs comparing to in FACs isolated neuronal cells from wild type. DESeq2, fold change > 2, FDR < 0.05. WBPaper00066485:ogt-1(ok1474)_upregulated_neuron
  Transcripts that showed significantly increased expression after four-day-old young adult worms were placed on NGM plates seeded with OP50 in the presence 5% Agaro-oligosaccharides(AGO) for 24 h, comparing to animals grown in the absence of AGO. Fold change > 2. WBPaper00064306:Agaro-oligosaccharides_upregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00196421 14278781 14278828 -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
48

1 Sequence Ontology Term