WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y105E8A.12a.1 Sequence Name  Y105E8A.12a.1
Length (nt)  3674   Chromosome Location  I: 14436810-14451889
Chromosome . Primary Identifier  I Chromosome Location . Start  14436810
Chromosome Location . End  14451889 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y105E8A.12a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00013672 catp-1 Y105E8A.12 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y105E8A.12a Y105E8A.12a 3366   I: 14437041-14437229

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y105E8A.12a.1 14436810 14451889 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

16 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon35796   420   I: 14436810-14437229 Caenorhabditis elegans
Exon35800   262   I: 14438347-14438608 Caenorhabditis elegans
Exon35802   200   I: 14438660-14438859 Caenorhabditis elegans
Exon35804   100   I: 14440084-14440183 Caenorhabditis elegans
Exon35806   243   I: 14440237-14440479 Caenorhabditis elegans
Exon35808   116   I: 14440547-14440662 Caenorhabditis elegans
Exon35817   285   I: 14444739-14445023 Caenorhabditis elegans
Exon35819   123   I: 14445094-14445216 Caenorhabditis elegans
Exon35821   111   I: 14445269-14445379 Caenorhabditis elegans
Exon35823   852   I: 14446007-14446858 Caenorhabditis elegans
Exon35825   220   I: 14448824-14449043 Caenorhabditis elegans
Exon35827   113   I: 14449100-14449212 Caenorhabditis elegans
Exon35829   259   I: 14449732-14449990 Caenorhabditis elegans
Exon35831   74   I: 14451046-14451119 Caenorhabditis elegans
Exon35833   209   I: 14451386-14451594 Caenorhabditis elegans
Exon35836   87   I: 14451803-14451889 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y105E8A.12a.1 14436810 14451889 -1

1 Sequence

Length
3674

1 Sequence Ontology Term

Identifier Name Description
transcript