WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y105E8A.12b.1 Sequence Name  Y105E8A.12b.1
Length (nt)  3415   Chromosome Location  I: 14436904-14451888
Chromosome . Primary Identifier  I Chromosome Location . Start  14436904
Chromosome Location . End  14451888 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y105E8A.12b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00013672 catp-1 Y105E8A.12 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y105E8A.12b Y105E8A.12b 3138   I: 14437105-14437229

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y105E8A.12b.1 14436904 14451888 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

16 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon35797   326   I: 14436904-14437229 Caenorhabditis elegans
Exon35801   98   I: 14438511-14438608 Caenorhabditis elegans
Exon35803   200   I: 14438660-14438859 Caenorhabditis elegans
Exon35805   100   I: 14440084-14440183 Caenorhabditis elegans
Exon35807   243   I: 14440237-14440479 Caenorhabditis elegans
Exon35809   116   I: 14440547-14440662 Caenorhabditis elegans
Exon35818   285   I: 14444739-14445023 Caenorhabditis elegans
Exon35820   123   I: 14445094-14445216 Caenorhabditis elegans
Exon35822   111   I: 14445269-14445379 Caenorhabditis elegans
Exon35824   852   I: 14446007-14446858 Caenorhabditis elegans
Exon35826   220   I: 14448824-14449043 Caenorhabditis elegans
Exon35828   113   I: 14449100-14449212 Caenorhabditis elegans
Exon35830   259   I: 14449732-14449990 Caenorhabditis elegans
Exon35832   74   I: 14451046-14451119 Caenorhabditis elegans
Exon35834   209   I: 14451386-14451594 Caenorhabditis elegans
Exon35835   86   I: 14451803-14451888 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y105E8A.12b.1 14436904 14451888 -1

1 Sequence

Length
3415

1 Sequence Ontology Term

Identifier Name Description
transcript