WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y105E8A.23b.1 Sequence Name  Y105E8A.23b.1
Length (nt)  3471   Chromosome Location  I: 14552188-14565844
Chromosome . Primary Identifier  I Chromosome Location . Start  14552188
Chromosome Location . End  14565844 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y105E8A.23b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00013680 rpom-1 Y105E8A.23 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y105E8A.23b Y105E8A.23b 3471   I: 14552188-14552347

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y105E8A.23b.1 14552188 14565844 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon35990   160   I: 14552188-14552347 Caenorhabditis elegans
Exon35993   120   I: 14552437-14552556 Caenorhabditis elegans
Exon35997   311   I: 14552860-14553170 Caenorhabditis elegans
Exon35999   54   I: 14553666-14553719 Caenorhabditis elegans
Exon36002   205   I: 14555063-14555267 Caenorhabditis elegans
Exon36006   582   I: 14555936-14556517 Caenorhabditis elegans
Exon36010   595   I: 14558546-14559140 Caenorhabditis elegans
Exon36015   235   I: 14560037-14560271 Caenorhabditis elegans
Exon36018   188   I: 14561209-14561396 Caenorhabditis elegans
Exon36021   706   I: 14563406-14564111 Caenorhabditis elegans
Exon36024   263   I: 14565266-14565528 Caenorhabditis elegans
Exon36026   52   I: 14565793-14565844 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y105E8A.23b.1 14552188 14565844 -1

1 Sequence

Length
3471

1 Sequence Ontology Term

Identifier Name Description
transcript