WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F39B2.4a.1 Sequence Name  F39B2.4a.1
Length (nt)  4907   Chromosome Location  I: 14777142-14787804
Chromosome . Primary Identifier  I Chromosome Location . Start  14777142
Chromosome Location . End  14787804 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F39B2.4a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006349 sur-2 F39B2.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F39B2.4a F39B2.4a 4764   I: 14777277-14777402

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F39B2.4a.1 14777142 14787804 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

17 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon36559   261   I: 14777142-14777402 Caenorhabditis elegans
Exon36560   423   I: 14778050-14778472 Caenorhabditis elegans
Exon36562   465   I: 14778905-14779369 Caenorhabditis elegans
Exon36564   282   I: 14779856-14780137 Caenorhabditis elegans
Exon36566   615   I: 14780686-14781300 Caenorhabditis elegans
Exon36568   153   I: 14781349-14781501 Caenorhabditis elegans
Exon36570   112   I: 14781552-14781663 Caenorhabditis elegans
Exon36572   214   I: 14781712-14781925 Caenorhabditis elegans
Exon36574   493   I: 14782338-14782830 Caenorhabditis elegans
Exon36576   368   I: 14783063-14783430 Caenorhabditis elegans
Exon36578   121   I: 14783771-14783891 Caenorhabditis elegans
Exon36580   268   I: 14784380-14784647 Caenorhabditis elegans
Exon36582   173   I: 14785471-14785643 Caenorhabditis elegans
Exon36584   264   I: 14785699-14785962 Caenorhabditis elegans
Exon36586   382   I: 14786961-14787342 Caenorhabditis elegans
Exon36588   194   I: 14787427-14787620 Caenorhabditis elegans
Exon36591   119   I: 14787686-14787804 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F39B2.4a.1 14777142 14787804 -1

1 Sequence

Length
4907

1 Sequence Ontology Term

Identifier Name Description
transcript