WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F39B2.4b.1 Sequence Name  F39B2.4b.1
Length (nt)  4917   Chromosome Location  I: 14777137-14787803
Chromosome . Primary Identifier  I Chromosome Location . Start  14777137
Chromosome Location . End  14787803 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F39B2.4b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006349 sur-2 F39B2.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F39B2.4b F39B2.4b 4770   I: 14777277-14777402

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F39B2.4b.1 14777137 14787803 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

17 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon36595   266   I: 14777137-14777402 Caenorhabditis elegans
Exon36598   423   I: 14778050-14778472 Caenorhabditis elegans
Exon36600   465   I: 14778905-14779369 Caenorhabditis elegans
Exon36602   282   I: 14779856-14780137 Caenorhabditis elegans
Exon36604   615   I: 14780686-14781300 Caenorhabditis elegans
Exon36606   153   I: 14781349-14781501 Caenorhabditis elegans
Exon36608   112   I: 14781552-14781663 Caenorhabditis elegans
Exon36610   214   I: 14781712-14781925 Caenorhabditis elegans
Exon36612   493   I: 14782338-14782830 Caenorhabditis elegans
Exon36614   374   I: 14783063-14783436 Caenorhabditis elegans
Exon36616   121   I: 14783771-14783891 Caenorhabditis elegans
Exon36618   268   I: 14784380-14784647 Caenorhabditis elegans
Exon36620   173   I: 14785471-14785643 Caenorhabditis elegans
Exon36622   264   I: 14785699-14785962 Caenorhabditis elegans
Exon36624   382   I: 14786961-14787342 Caenorhabditis elegans
Exon36626   194   I: 14787427-14787620 Caenorhabditis elegans
Exon36627   118   I: 14787686-14787803 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F39B2.4b.1 14777137 14787803 -1

1 Sequence

Length
4917

1 Sequence Ontology Term

Identifier Name Description
transcript