WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y54E5B.1c.1 Sequence Name  Y54E5B.1c.1
Length (nt)  2562   Chromosome Location  I: 14807462-14815729
Chromosome . Primary Identifier  I Chromosome Location . Start  14807462
Chromosome Location . End  14815729 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y54E5B.1c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004889 smp-1 Y54E5B.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y54E5B.1c Y54E5B.1c 2145   I: 14807480-14807585

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y54E5B.1c.1 14807462 14815729 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon36621   124   I: 14807462-14807585 Caenorhabditis elegans
Exon36632   103   I: 14810443-14810545 Caenorhabditis elegans
Exon36638   46   I: 14810821-14810866 Caenorhabditis elegans
Exon36644   326   I: 14810909-14811234 Caenorhabditis elegans
Exon36650   80   I: 14811399-14811478 Caenorhabditis elegans
Exon36656   98   I: 14812262-14812359 Caenorhabditis elegans
Exon36662   142   I: 14812418-14812559 Caenorhabditis elegans
Exon36668   155   I: 14812729-14812883 Caenorhabditis elegans
Exon36673   509   I: 14813321-14813829 Caenorhabditis elegans
Exon36680   113   I: 14814479-14814591 Caenorhabditis elegans
Exon36685   119   I: 14814642-14814760 Caenorhabditis elegans
Exon36687   174   I: 14814809-14814982 Caenorhabditis elegans
Exon36694   573   I: 14815157-14815729 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y54E5B.1c.1 14807462 14815729 1

1 Sequence

Length
2562

1 Sequence Ontology Term

Identifier Name Description
transcript