WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y54E5B.1a.1 Sequence Name  Y54E5B.1a.1
Length (nt)  2546   Chromosome Location  I: 14807468-14815725
Chromosome . Primary Identifier  I Chromosome Location . Start  14807468
Chromosome Location . End  14815725 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y54E5B.1a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004889 smp-1 Y54E5B.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y54E5B.1a Y54E5B.1a 2139   I: 14807480-14807585

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y54E5B.1a.1 14807468 14815725 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon36624   118   I: 14807468-14807585 Caenorhabditis elegans
Exon36627   103   I: 14810443-14810545 Caenorhabditis elegans
Exon36633   46   I: 14810821-14810866 Caenorhabditis elegans
Exon36639   326   I: 14810909-14811234 Caenorhabditis elegans
Exon36645   80   I: 14811399-14811478 Caenorhabditis elegans
Exon36651   98   I: 14812262-14812359 Caenorhabditis elegans
Exon36661   142   I: 14812418-14812559 Caenorhabditis elegans
Exon36663   155   I: 14812729-14812883 Caenorhabditis elegans
Exon36669   509   I: 14813321-14813829 Caenorhabditis elegans
Exon36676   113   I: 14814479-14814591 Caenorhabditis elegans
Exon36681   119   I: 14814642-14814760 Caenorhabditis elegans
Exon36688   168   I: 14814815-14814982 Caenorhabditis elegans
Exon36692   569   I: 14815157-14815725 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y54E5B.1a.1 14807468 14815725 1

1 Sequence

Length
2546

1 Sequence Ontology Term

Identifier Name Description
transcript