WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y54E5B.1b.2 Sequence Name  Y54E5B.1b.2
Length (nt)  2583   Chromosome Location  I: 14807466-14815753
Chromosome . Primary Identifier  I Chromosome Location . Start  14807466
Chromosome Location . End  14815753 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y54E5B.1b.2

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004889 smp-1 Y54E5B.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y54E5B.1b Y54E5B.1b 795   I: 14807480-14807585

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y54E5B.1b.2 14807466 14815753 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon36660   120   I: 14807466-14807585 Caenorhabditis elegans
Exon36666   103   I: 14810443-14810545 Caenorhabditis elegans
Exon36672   46   I: 14810821-14810866 Caenorhabditis elegans
Exon36678   326   I: 14810909-14811234 Caenorhabditis elegans
Exon36684   80   I: 14811399-14811478 Caenorhabditis elegans
Exon36690   98   I: 14812262-14812359 Caenorhabditis elegans
Exon36695   149   I: 14812411-14812559 Caenorhabditis elegans
Exon36702   155   I: 14812729-14812883 Caenorhabditis elegans
Exon36708   509   I: 14813321-14813829 Caenorhabditis elegans
Exon36715   113   I: 14814479-14814591 Caenorhabditis elegans
Exon36720   119   I: 14814642-14814760 Caenorhabditis elegans
Exon36726   168   I: 14814815-14814982 Caenorhabditis elegans
Exon36732   597   I: 14815157-14815753 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y54E5B.1b.2 14807466 14815753 1

1 Sequence

Length
2583

1 Sequence Ontology Term

Identifier Name Description
transcript