WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T01D1.2f.1 Sequence Name  T01D1.2f.1
Length (nt)  2318   Chromosome Location  II: 163078-170166
Chromosome . Primary Identifier  II Chromosome Location . Start  163078
Chromosome Location . End  170166 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T01D1.2f.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001340 etr-1 T01D1.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T01D1.2f T01D1.2f 1767   II: 163142-163324

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T01D1.2f.1 163078 170166 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon37815   247   II: 163078-163324 Caenorhabditis elegans
Exon37844   238   II: 164406-164643 Caenorhabditis elegans
Exon37869   126   II: 164701-164826 Caenorhabditis elegans
Exon37894   80   II: 166071-166150 Caenorhabditis elegans
Exon37914   153   II: 166753-166905 Caenorhabditis elegans
Exon37944   118   II: 166961-167078 Caenorhabditis elegans
Exon37981   144   II: 167904-168047 Caenorhabditis elegans
Exon38006   219   II: 168175-168393 Caenorhabditis elegans
Exon38019   147   II: 168543-168689 Caenorhabditis elegans
Exon38062   231   II: 168793-169023 Caenorhabditis elegans
Exon38110   615   II: 169552-170166 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T01D1.2f.1 163078 170166 1

1 Sequence

Length
2318

1 Sequence Ontology Term

Identifier Name Description
transcript