WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T01D1.2f.3 Sequence Name  T01D1.2f.3
Length (nt)  2062   Chromosome Location  II: 163080-170627
Chromosome . Primary Identifier  II Chromosome Location . Start  163080
Chromosome Location . End  170627 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T01D1.2f.3

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001340 etr-1 T01D1.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T01D1.2f T01D1.2f 1767   II: 163142-163324

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T01D1.2f.3 163080 170627 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon37818   245   II: 163080-163324 Caenorhabditis elegans
Exon37846   238   II: 164406-164643 Caenorhabditis elegans
Exon37871   126   II: 164701-164826 Caenorhabditis elegans
Exon37896   80   II: 166071-166150 Caenorhabditis elegans
Exon37916   153   II: 166753-166905 Caenorhabditis elegans
Exon37946   118   II: 166961-167078 Caenorhabditis elegans
Exon37983   144   II: 167904-168047 Caenorhabditis elegans
Exon38008   219   II: 168175-168393 Caenorhabditis elegans
Exon38021   147   II: 168543-168689 Caenorhabditis elegans
Exon38064   231   II: 168793-169023 Caenorhabditis elegans
Exon38104   165   II: 169552-169716 Caenorhabditis elegans
Exon38119   196   II: 170432-170627 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T01D1.2f.3 163080 170627 1

1 Sequence

Length
2062

1 Sequence Ontology Term

Identifier Name Description
transcript