WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T01D1.2d.2 Sequence Name  T01D1.2d.2
Length (nt)  2086   Chromosome Location  II: 163142-170157
Chromosome . Primary Identifier  II Chromosome Location . Start  163142
Chromosome Location . End  170157 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T01D1.2d.2

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001340 etr-1 T01D1.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T01D1.2d T01D1.2d 1608   II: 163142-163324

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T01D1.2d.2 163142 170157 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon37832   183   II: 163142-163324 Caenorhabditis elegans
Exon37839   238   II: 164406-164643 Caenorhabditis elegans
Exon37864   126   II: 164701-164826 Caenorhabditis elegans
Exon37889   80   II: 166071-166150 Caenorhabditis elegans
Exon37939   118   II: 166961-167078 Caenorhabditis elegans
Exon37976   144   II: 167904-168047 Caenorhabditis elegans
Exon38001   219   II: 168175-168393 Caenorhabditis elegans
Exon38032   141   II: 168549-168689 Caenorhabditis elegans
Exon38057   231   II: 168793-169023 Caenorhabditis elegans
Exon38108   606   II: 169552-170157 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T01D1.2d.2 163142 170157 1

1 Sequence

Length
2086

1 Sequence Ontology Term

Identifier Name Description
transcript