WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C41D7.2.1 Sequence Name  C41D7.2.1
Length (nt)  3009   Chromosome Location  II: 362484-367553
Chromosome . Primary Identifier  II Chromosome Location . Start  362484
Chromosome Location . End  367553 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C41D7.2.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004218 ptr-3 C41D7.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C41D7.2 C41D7.2 2784   II: 362639-362800

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C41D7.2.1 362484 367553 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon38762   317   II: 362484-362800 Caenorhabditis elegans
Exon38764   579   II: 362854-363432 Caenorhabditis elegans
Exon38766   372   II: 363934-364305 Caenorhabditis elegans
Exon38768   321   II: 364353-364673 Caenorhabditis elegans
Exon38770   190   II: 364730-364919 Caenorhabditis elegans
Exon38772   200   II: 364971-365170 Caenorhabditis elegans
Exon38774   184   II: 365482-365665 Caenorhabditis elegans
Exon38776   128   II: 365714-365841 Caenorhabditis elegans
Exon38778   189   II: 365890-366078 Caenorhabditis elegans
Exon38780   228   II: 366145-366372 Caenorhabditis elegans
Exon38782   136   II: 366417-366552 Caenorhabditis elegans
Exon38784   97   II: 367330-367426 Caenorhabditis elegans
Exon38786   68   II: 367486-367553 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C41D7.2.1 362484 367553 -1

1 Sequence

Length
3009

1 Sequence Ontology Term

Identifier Name Description
transcript