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Transcripts that showed significantly increased expression in L1 neural cells comparing to in adult neural cells. |
DESeq2 (v1.18.1) fold change > 2, P-adj<0.05, using BenjaminiHochberg correction. |
WBPaper00060811:L1_vs_adult_upregulated_neural
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Transcripts of coding genes that showed significantly decreased expression in muscle. |
DESeq2 (version 1.24.0). Transcripts with a false-discovery rate adjusted p-value less than 0.05 were considered significantly differentially expressed. |
WBPaper00062325:muscle_depleted_coding-RNA
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Transcripts that showed significantly increased expression in sin-3(tm1276) comparing to in N2. |
DESeq2, fold change > 2, p-value < 0.01. |
WBPaper00061203:sin-3(tm1276)_upregulated
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Top 300 transcripts enriched in ABalppppppa, ABpraaapppa according to single cell RNAseq. |
Top 300 enriched transcripts were determined by log2.ratio of the tpm in the cell type vs the tpm in the other cells * the log2 of the cell.type tpm. |
WBPaper00061340:ASE_parent
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Transcripts that showed significantly decreased expression in sin-3(tm1276) comparing to in N2 at early embryo when there were only 3 -5 eggs in the adult. |
DESeq2, fold change > 2, adjusted p-value < 0.01 |
WBPaper00058598:sin-3(tm1276)_downregulated
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Transcripts that showed significantly increased expression among animals treated with 400mM sucrose and 500 mg per ml stearic acid from L1 to L4 larva stage comparing to animals grown up on control plates. |
CuffDiff, FDR <= 0.05, fold change >= 2. |
WBPaper00059253:sucrose_stearic-acid_upregulated
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Transcripts that showed significantly increased expression in hda-2(ok1479) comparing to in N2 animals. |
DESeq2 (version 1.28.1), FDR < 0.01, fold change > 2. |
WBPaper00062159:hda-2(ok1479)_upregulated
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Bacteria infection: Enterococcus faecalis OG1RF. 16 hours of exposure after L4 larva stage at 25C. |
Transcripts that showed significantly increased expression in skpo-1(ok1640) animals fed by E. faecalis strain OG1RF for 16 hours after L4 larva stage at 25C. |
DESeq2, fold change > 2. |
WBPaper00061081:E.faecalis_upregulated_skpo-1(ok1640)
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Germline-enriched and sex-biased expression profile cluster A. |
hierarchical clustering |
[cgc6390]:Cluster_A
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Top 300 transcripts enriched in ABalppppapa, ABpraaapapa according to single cell RNAseq. |
Top 300 enriched transcripts were determined by log2.ratio of the tpm in the cell type vs the tpm in the other cells * the log2 of the cell.type tpm. |
WBPaper00061340:OLL_parent
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Transcripts that showed significantly increased expression in lin-29(n333) comparing to in N2 at day 1 adult stage. |
DESeq2, FDR < 0.01, fold change > 2. |
WBPaper00066970:lin-29(n333)_upregulated
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Transcripts that showed significantly increased expression in endu-2(tm4977) comparing to in N2 animals at young adult stage. |
The DESeq2 (GalaxyVersion 2.11.40.6 + galaxy1) was used to determine differentiallyexpressed features from count tables of differential transcript abundances. log2FC > 1, FDR < 0.01. |
WBPaper00065749:endu-2(tm4977)_upregulated
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Top 300 transcripts enriched in ABplapppaa, ABprapppaa according to single cell RNAseq. |
Top 300 enriched transcripts were determined by log2.ratio of the tpm in the cell type vs the tpm in the other cells * the log2 of the cell.type tpm. |
WBPaper00061340:PVQ_parent
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Genome-wide analysis of developmental and sex-regulated gene expression profile. |
self-organizing map |
cgc4489_group_9
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Transcripts that showed significantly increased expression by somatic RAGA-1 degradation. |
DESeq2_1.34.0, FDR < 0.01, fold change > 2. |
WBPaper00066005:RAGA-1_degradation_somatic_upregulated
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Transcripts that showed significantly decreased expression in hda-1(RNAi) embryos comparing to control animals. |
DESeq2, fold change > 2, FDR < 0.05. |
WBPaper00067044:hda-1(RNAi)_downregulated
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Transcripts that showed significantly decreased expression in hsf-1(RNAi) comparing to in ash-2 animals injected with vector. |
Differential mRNA expression using DESeq2. mRNAs with a FDR < 0.05 and fold change > 2 considered differentially expressed. |
WBPaper00066232:hsf-1(RNAi)_downregulated_ash-2
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Transcripts that showed significantly decreased expression in hsf-1(RNAi) comparing to in wild type animals injected with vector. |
Differential mRNA expression using DESeq2. mRNAs with a FDR < 0.05 and fold change > 2 considered differentially expressed. |
WBPaper00066232:hsf-1(RNAi)_downregulated_WT
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Transcripts that showed significantly decreased expression in animals exposed to Camptothecin for 3 hours at 2C. |
p < 0.01, logFC > 1 or p < 0.01, logFC < -1. |
WBPaper00066610:Camptothecin_downregulated_2C_3h
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Transcripts that showed significantly decreased expression in him-17(me24) comparing to in N2 animals. |
DESeq2, fold change > 2, FDR < 0.05. |
WBPaper00064769:him-17(me24)_downregulated
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Top 300 transcripts enriched in ADFL, ADFR, AWBL, AWBR according to single cell RNAseq. |
Top 300 enriched transcripts were determined by log2.ratio of the tpm in the cell type vs the tpm in the other cells * the log2 of the cell.type tpm. |
WBPaper00061340:ADF_AWB
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Top 300 transcripts enriched in ASGL, ASGR, AWAL, AWAR according to single cell RNAseq. |
Top 300 enriched transcripts were determined by log2.ratio of the tpm in the cell type vs the tpm in the other cells * the log2 of the cell.type tpm. |
WBPaper00061340:ASG_AWA
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Top 300 transcripts enriched in AUAL, AUAR according to single cell RNAseq. |
Top 300 enriched transcripts were determined by log2.ratio of the tpm in the cell type vs the tpm in the other cells * the log2 of the cell.type tpm. |
WBPaper00061340:AUA
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Top 300 transcripts enriched in ABaraapapaa, ABaraapppaa according to single cell RNAseq. |
Top 300 enriched transcripts were determined by log2.ratio of the tpm in the cell type vs the tpm in the other cells * the log2 of the cell.type tpm. |
WBPaper00061340:NSM_parent
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Glucose rich diet. |
Transcripts that showed significantly increased expression in lpin-1(RNAi) animals grown on plates with additional 2% high glucose, comparing to lpin-1(RNAi) animals without additional glucose. |
Differentially expressed genes (fold change > 2 and adjusted p value < 0.05) were identified by using DESeq2 (v.1.22.2). |
WBPaper00059735:glucose_upregulated_lpin-1(RNAi)
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Glucose rich diet. |
Transcripts that showed significantly increased expression in WT animals (N2 injected with empty RNAi vector) grown on plates with additional 2% high glucose, comparing to WT animals without additional glucose. |
Differentially expressed genes (fold change > 2 and adjusted p value < 0.05) were identified by using DESeq2 (v.1.22.2). |
WBPaper00059735:glucose_upregulated_N2
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Top 300 transcripts enriched in ABalpappaa, ABarapapaa according to single cell RNAseq. |
Top 300 enriched transcripts were determined by log2.ratio of the tpm in the cell type vs the tpm in the other cells * the log2 of the cell.type tpm. |
WBPaper00061340:I2_grandparent
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Top 300 transcripts enriched in ABplppaapa, ABprppaapa according to single cell RNAseq. |
Top 300 enriched transcripts were determined by log2.ratio of the tpm in the cell type vs the tpm in the other cells * the log2 of the cell.type tpm. |
WBPaper00061340:RIM_parent
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Top 300 transcripts enriched in ABalppppaa, ABpraaapaa according to single cell RNAseq. |
Top 300 enriched transcripts were determined by log2.ratio of the tpm in the cell type vs the tpm in the other cells * the log2 of the cell.type tpm. |
WBPaper00061340:ADL_parent
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Top 300 transcripts enriched in ABalaaaala, ABalaapaaa according to single cell RNAseq. |
Top 300 enriched transcripts were determined by log2.ratio of the tpm in the cell type vs the tpm in the other cells * the log2 of the cell.type tpm. |
WBPaper00061340:AIN_parent
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