WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F47F6.1d.1 Sequence Name  F47F6.1d.1
Length (nt)  1965   Chromosome Location  II: 1234175-1252359
Chromosome . Primary Identifier  II Chromosome Location . Start  1234175
Chromosome Location . End  1252359 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F47F6.1d.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00018572 lin-42 F47F6.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F47F6.1d F47F6.1d 1965   II: 1234175-1234429

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F47F6.1d.1 1234175 1252359 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon40572   255   II: 1234175-1234429 Caenorhabditis elegans
Exon40576   142   II: 1234584-1234725 Caenorhabditis elegans
Exon40580   90   II: 1235662-1235751 Caenorhabditis elegans
Exon40585   371   II: 1236019-1236389 Caenorhabditis elegans
Exon40592   275   II: 1239949-1240223 Caenorhabditis elegans
Exon40595   107   II: 1240701-1240807 Caenorhabditis elegans
Exon40599   186   II: 1241207-1241392 Caenorhabditis elegans
Exon40604   302   II: 1243372-1243673 Caenorhabditis elegans
Exon40608   86   II: 1243950-1244035 Caenorhabditis elegans
Exon40612   151   II: 1252209-1252359 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F47F6.1d.1 1234175 1252359 -1

1 Sequence

Length
1965

1 Sequence Ontology Term

Identifier Name Description
transcript