WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:F47F6.1c Sequence Name  F47F6.1c
Length (nt)  1362   Chromosome Location  II: 1239523-1240223
Chromosome . Primary Identifier  II Chromosome Location . Start  1239523
Chromosome Location . End  1240223
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F47F6.1c

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE10706 LIN-42, isoform c 49.8 453 Caenorhabditis elegans
 

Other

8 RNAi

WormBase ID
WBRNAi00027350
WBRNAi00086270
WBRNAi00047671
WBRNAi00025547
WBRNAi00015203
WBRNAi00086265
WBRNAi00086268
WBRNAi00087769

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:F47F6.1c 1239523 1240223 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00018572 lin-42 F47F6.1 Caenorhabditis elegans

5 Locations


Feature . Primary Identifier
Start End Strand
CDS:F47F6.1c 1239523 1240223 -1
CDS:F47F6.1c 1240701 1240807 -1
CDS:F47F6.1c 1241207 1241392 -1
CDS:F47F6.1c 1243372 1243673 -1
CDS:F47F6.1c 1243950 1244015 -1

1 Sequence

Length
1362

1 Sequence Ontology Term

Identifier Name Description
CDS  

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:F47F6.1c.1 F47F6.1c.1 1538   II: 1239367-1244035