WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C08F1.4a.1 Sequence Name  C08F1.4a.1
Length (nt)  2248   Chromosome Location  II: 1772085-1778542
Chromosome . Primary Identifier  II Chromosome Location . Start  1772085
Chromosome Location . End  1778542 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C08F1.4a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00015608 math-3 C08F1.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C08F1.4a C08F1.4a 1563   II: 1776310-1776409

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C08F1.4a.1 1772085 1778542 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon41634   20   II: 1772085-1772104 Caenorhabditis elegans
Exon41651   474   II: 1775936-1776409 Caenorhabditis elegans
Exon41655   133   II: 1776451-1776583 Caenorhabditis elegans
Exon41659   342   II: 1776627-1776968 Caenorhabditis elegans
Exon41663   99   II: 1777014-1777112 Caenorhabditis elegans
Exon41667   281   II: 1777168-1777448 Caenorhabditis elegans
Exon41671   127   II: 1777508-1777634 Caenorhabditis elegans
Exon41675   278   II: 1777681-1777958 Caenorhabditis elegans
Exon41679   112   II: 1778008-1778119 Caenorhabditis elegans
Exon41684   382   II: 1778161-1778542 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C08F1.4a.1 1772085 1778542 1

1 Sequence

Length
2248

1 Sequence Ontology Term

Identifier Name Description
transcript