WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:C08F1.4a Sequence Name  C08F1.4a
Length (nt)  1563   Chromosome Location  II: 1776310-1776409
Chromosome . Primary Identifier  II Chromosome Location . Start  1776310
Chromosome Location . End  1776409
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C08F1.4a

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE27059 MATH-3, isoform a 61.4 520 Caenorhabditis elegans
 

Other

4 RNAi

WormBase ID
WBRNAi00001135
WBRNAi00040107
WBRNAi00010460
WBRNAi00028678

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:C08F1.4a 1776310 1776409 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00015608 math-3 C08F1.4 Caenorhabditis elegans

9 Locations


Feature . Primary Identifier
Start End Strand
CDS:C08F1.4a 1776310 1776409 1
CDS:C08F1.4a 1776451 1776583 1
CDS:C08F1.4a 1776627 1776968 1
CDS:C08F1.4a 1777014 1777112 1
CDS:C08F1.4a 1777168 1777448 1
CDS:C08F1.4a 1777508 1777634 1
CDS:C08F1.4a 1777681 1777958 1
CDS:C08F1.4a 1778008 1778119 1
CDS:C08F1.4a 1778161 1778251 1

1 Sequence

Length
1563

1 Sequence Ontology Term

Identifier Name Description
CDS  

3 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:C08F1.4a.1 C08F1.4a.1 2248   II: 1772085-1778542
Transcript:C08F1.4a.2 C08F1.4a.2 2315   II: 1775800-1778542
Transcript:C08F1.4a.3 C08F1.4a.3 2364   II: 1775800-1778542