WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C08F1.5.1 Sequence Name  C08F1.5.1
Length (nt)  2898   Chromosome Location  II: 1778772-1782574
Chromosome . Primary Identifier  II Chromosome Location . Start  1778772
Chromosome Location . End  1782574 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C08F1.5.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00015609 math-4 C08F1.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C08F1.5 C08F1.5 2502   II: 1778901-1779195

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C08F1.5.1 1778772 1782574 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon41724   424   II: 1778772-1779195 Caenorhabditis elegans
Exon41725   112   II: 1779241-1779352 Caenorhabditis elegans
Exon41726   278   II: 1779402-1779679 Caenorhabditis elegans
Exon41727   127   II: 1779727-1779853 Caenorhabditis elegans
Exon41728   284   II: 1779909-1780192 Caenorhabditis elegans
Exon41729   96   II: 1780384-1780479 Caenorhabditis elegans
Exon41730   369   II: 1780526-1780894 Caenorhabditis elegans
Exon41731   127   II: 1780941-1781067 Caenorhabditis elegans
Exon41732   293   II: 1781117-1781409 Caenorhabditis elegans
Exon41733   118   II: 1781695-1781812 Caenorhabditis elegans
Exon41734   296   II: 1781857-1782152 Caenorhabditis elegans
Exon41735   374   II: 1782201-1782574 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C08F1.5.1 1778772 1782574 -1

1 Sequence

Length
2898

1 Sequence Ontology Term

Identifier Name Description
transcript