WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T16A1.7.1 Sequence Name  T16A1.7.1
Length (nt)  3090   Chromosome Location  II: 2085249-2090636
Chromosome . Primary Identifier  II Chromosome Location . Start  2085249
Chromosome Location . End  2090636 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T16A1.7.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004149 trpl-5 T16A1.7 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T16A1.7 T16A1.7 1506   II: 2086911-2087023

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T16A1.7.1 2085249 2090636 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon42294   1342   II: 2085249-2086590 Caenorhabditis elegans
Exon42295   72   II: 2086640-2086711 Caenorhabditis elegans
Exon42296   265   II: 2086759-2087023 Caenorhabditis elegans
Exon42297   79   II: 2087072-2087150 Caenorhabditis elegans
Exon42298   327   II: 2087616-2087942 Caenorhabditis elegans
Exon42299   177   II: 2088330-2088506 Caenorhabditis elegans
Exon42300   84   II: 2088552-2088635 Caenorhabditis elegans
Exon42301   241   II: 2088825-2089065 Caenorhabditis elegans
Exon42302   147   II: 2089792-2089938 Caenorhabditis elegans
Exon42303   100   II: 2089985-2090084 Caenorhabditis elegans
Exon42304   94   II: 2090138-2090231 Caenorhabditis elegans
Exon42305   162   II: 2090475-2090636 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T16A1.7.1 2085249 2090636 -1

1 Sequence

Length
3090

1 Sequence Ontology Term

Identifier Name Description
transcript