WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F54A3.6a.1 Sequence Name  F54A3.6a.1
Length (nt)  1651   Chromosome Location  II: 2225806-2232470
Chromosome . Primary Identifier  II Chromosome Location . Start  2225806
Chromosome Location . End  2232470 Method  Coding_transcript
Quick Links:
 
Quick Links:
 

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F54A3.6a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00018785 F54A3.6 F54A3.6 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F54A3.6a F54A3.6a 1413   II: 2225905-2226024

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F54A3.6a.1 2225806 2232470 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon42491   219   II: 2225806-2226024 Caenorhabditis elegans
Exon42495   334   II: 2226938-2227271 Caenorhabditis elegans
Exon42500   248   II: 2229193-2229440 Caenorhabditis elegans
Exon42503   132   II: 2230411-2230542 Caenorhabditis elegans
Exon42507   90   II: 2230675-2230764 Caenorhabditis elegans
Exon42508   39   II: 2230829-2230867 Caenorhabditis elegans
Exon42511   69   II: 2231469-2231537 Caenorhabditis elegans
Exon42514   69   II: 2231693-2231761 Caenorhabditis elegans
Exon42517   70   II: 2231809-2231878 Caenorhabditis elegans
Exon42520   55   II: 2231922-2231976 Caenorhabditis elegans
Exon42523   136   II: 2232044-2232179 Caenorhabditis elegans
Exon42526   29   II: 2232229-2232257 Caenorhabditis elegans
Exon42531   161   II: 2232310-2232470 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F54A3.6a.1 2225806 2232470 -1

1 Sequence

Length
1651

1 Sequence Ontology Term

Identifier Name Description
transcript