WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F54A3.6b.1 Sequence Name  F54A3.6b.1
Length (nt)  1709   Chromosome Location  II: 2225817-2232452
Chromosome . Primary Identifier  II Chromosome Location . Start  2225817
Chromosome Location . End  2232452 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F54A3.6b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00018785 F54A3.6 F54A3.6 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F54A3.6b F54A3.6b 594   II: 2230660-2230764

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F54A3.6b.1 2225817 2232452 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon42529   208   II: 2225817-2226024 Caenorhabditis elegans
Exon42533   334   II: 2226938-2227271 Caenorhabditis elegans
Exon42538   248   II: 2229193-2229440 Caenorhabditis elegans
Exon42541   132   II: 2230411-2230542 Caenorhabditis elegans
Exon42543   177   II: 2230588-2230764 Caenorhabditis elegans
Exon42546   39   II: 2230829-2230867 Caenorhabditis elegans
Exon42549   69   II: 2231469-2231537 Caenorhabditis elegans
Exon42552   69   II: 2231693-2231761 Caenorhabditis elegans
Exon42555   70   II: 2231809-2231878 Caenorhabditis elegans
Exon42558   55   II: 2231922-2231976 Caenorhabditis elegans
Exon42561   136   II: 2232044-2232179 Caenorhabditis elegans
Exon42564   29   II: 2232229-2232257 Caenorhabditis elegans
Exon42567   143   II: 2232310-2232452 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F54A3.6b.1 2225817 2232452 -1

1 Sequence

Length
1709

1 Sequence Ontology Term

Identifier Name Description
transcript