WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F54A3.2.1 Sequence Name  F54A3.2.1
Length (nt)  2668   Chromosome Location  II: 2243642-2254368
Chromosome . Primary Identifier  II Chromosome Location . Start  2243642
Chromosome Location . End  2254368 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F54A3.2.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00018781 F54A3.2 F54A3.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F54A3.2 F54A3.2 2247   II: 2243655-2243771

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F54A3.2.1 2243642 2254368 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon42579   130   II: 2243642-2243771 Caenorhabditis elegans
Exon42580   192   II: 2245124-2245315 Caenorhabditis elegans
Exon42582   90   II: 2246478-2246567 Caenorhabditis elegans
Exon42583   159   II: 2246800-2246958 Caenorhabditis elegans
Exon42585   672   II: 2248996-2249667 Caenorhabditis elegans
Exon42586   165   II: 2250574-2250738 Caenorhabditis elegans
Exon42587   135   II: 2251241-2251375 Caenorhabditis elegans
Exon42588   382   II: 2251638-2252019 Caenorhabditis elegans
Exon42589   177   II: 2253162-2253338 Caenorhabditis elegans
Exon42590   566   II: 2253803-2254368 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F54A3.2.1 2243642 2254368 1

1 Sequence

Length
2668

1 Sequence Ontology Term

Identifier Name Description
transcript