WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F53G2.6a.1 Sequence Name  F53G2.6a.1
Length (nt)  3111   Chromosome Location  II: 2460842-2473370
Chromosome . Primary Identifier  II Chromosome Location . Start  2460842
Chromosome Location . End  2473370 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F53G2.6a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006647 tsr-1 F53G2.6 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F53G2.6a F53G2.6a 2490   II: 2461193-2461250

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F53G2.6a.1 2460842 2473370 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

16 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon42990   409   II: 2460842-2461250 Caenorhabditis elegans
Exon42992   104   II: 2461795-2461898 Caenorhabditis elegans
Exon42994   165   II: 2462191-2462355 Caenorhabditis elegans
Exon42996   252   II: 2463080-2463331 Caenorhabditis elegans
Exon42998   117   II: 2463995-2464111 Caenorhabditis elegans
Exon43003   206   II: 2464190-2464395 Caenorhabditis elegans
Exon43005   190   II: 2465258-2465447 Caenorhabditis elegans
Exon43007   219   II: 2465639-2465857 Caenorhabditis elegans
Exon43010   77   II: 2466745-2466821 Caenorhabditis elegans
Exon43012   140   II: 2466876-2467015 Caenorhabditis elegans
Exon43014   362   II: 2467959-2468320 Caenorhabditis elegans
Exon43016   141   II: 2468912-2469052 Caenorhabditis elegans
Exon43018   285   II: 2469212-2469496 Caenorhabditis elegans
Exon43021   205   II: 2470860-2471064 Caenorhabditis elegans
Exon43022   126   II: 2471111-2471236 Caenorhabditis elegans
Exon43023   113   II: 2473258-2473370 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F53G2.6a.1 2460842 2473370 -1

1 Sequence

Length
3111

1 Sequence Ontology Term

Identifier Name Description
transcript