WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F53G2.4a.1 Sequence Name  F53G2.4a.1
Length (nt)  1678   Chromosome Location  II: 2452970-2458981
Chromosome . Primary Identifier  II Chromosome Location . Start  2452970
Chromosome Location . End  2458981 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F53G2.4a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004129 pqn-42 F53G2.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F53G2.4a F53G2.4a 1578   II: 2453061-2453210

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F53G2.4a.1 2452970 2458981 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon43004   241   II: 2452970-2453210 Caenorhabditis elegans
Exon43008   102   II: 2453343-2453444 Caenorhabditis elegans
Exon43009   99   II: 2453492-2453590 Caenorhabditis elegans
Exon43011   126   II: 2453944-2454069 Caenorhabditis elegans
Exon43014   186   II: 2454162-2454347 Caenorhabditis elegans
Exon43017   74   II: 2455734-2455807 Caenorhabditis elegans
Exon43019   485   II: 2456849-2457333 Caenorhabditis elegans
Exon43021   83   II: 2457861-2457943 Caenorhabditis elegans
Exon43023   94   II: 2458003-2458096 Caenorhabditis elegans
Exon43026   188   II: 2458794-2458981 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F53G2.4a.1 2452970 2458981 -1

1 Sequence

Length
1678

1 Sequence Ontology Term

Identifier Name Description
transcript