WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F53G2.4b.1 Sequence Name  F53G2.4b.1
Length (nt)  1694   Chromosome Location  II: 2452982-2458976
Chromosome . Primary Identifier  II Chromosome Location . Start  2452982
Chromosome Location . End  2458976 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F53G2.4b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004129 pqn-42 F53G2.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F53G2.4b F53G2.4b 1611   II: 2453061-2453210

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F53G2.4b.1 2452982 2458976 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon43005   229   II: 2452982-2453210 Caenorhabditis elegans
Exon43007   135   II: 2453310-2453444 Caenorhabditis elegans
Exon43010   99   II: 2453492-2453590 Caenorhabditis elegans
Exon43012   126   II: 2453944-2454069 Caenorhabditis elegans
Exon43015   186   II: 2454162-2454347 Caenorhabditis elegans
Exon43018   74   II: 2455734-2455807 Caenorhabditis elegans
Exon43020   485   II: 2456849-2457333 Caenorhabditis elegans
Exon43022   83   II: 2457861-2457943 Caenorhabditis elegans
Exon43024   94   II: 2458003-2458096 Caenorhabditis elegans
Exon43025   183   II: 2458794-2458976 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F53G2.4b.1 2452982 2458976 -1

1 Sequence

Length
1694

1 Sequence Ontology Term

Identifier Name Description
transcript