WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F53G2.6b.1 Sequence Name  F53G2.6b.1
Length (nt)  2484   Chromosome Location  II: 2461193-2471033
Chromosome . Primary Identifier  II Chromosome Location . Start  2461193
Chromosome Location . End  2471033 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F53G2.6b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006647 tsr-1 F53G2.6 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F53G2.6b F53G2.6b 2484   II: 2461193-2461250

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F53G2.6b.1 2461193 2471033 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

14 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon43028   58   II: 2461193-2461250 Caenorhabditis elegans
Exon43030   104   II: 2461795-2461898 Caenorhabditis elegans
Exon43032   165   II: 2462191-2462355 Caenorhabditis elegans
Exon43034   252   II: 2463080-2463331 Caenorhabditis elegans
Exon43036   117   II: 2463995-2464111 Caenorhabditis elegans
Exon43041   206   II: 2464190-2464395 Caenorhabditis elegans
Exon43043   184   II: 2465270-2465453 Caenorhabditis elegans
Exon43045   219   II: 2465639-2465857 Caenorhabditis elegans
Exon43048   77   II: 2466745-2466821 Caenorhabditis elegans
Exon43050   140   II: 2466876-2467015 Caenorhabditis elegans
Exon43052   362   II: 2467959-2468320 Caenorhabditis elegans
Exon43054   141   II: 2468912-2469052 Caenorhabditis elegans
Exon43056   285   II: 2469212-2469496 Caenorhabditis elegans
Exon43057   174   II: 2470860-2471033 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F53G2.6b.1 2461193 2471033 -1

1 Sequence

Length
2484

1 Sequence Ontology Term

Identifier Name Description
transcript