WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F22E5.3.1 Sequence Name  F22E5.3.1
Length (nt)  3569   Chromosome Location  II: 2659664-2664686
Chromosome . Primary Identifier  II Chromosome Location . Start  2659664
Chromosome Location . End  2664686 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F22E5.3.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001546 gcy-21 F22E5.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F22E5.3 F22E5.3 3492   II: 2659670-2659823

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F22E5.3.1 2659664 2664686 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

17 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon43410   160   II: 2659664-2659823 Caenorhabditis elegans
Exon43411   138   II: 2659869-2660006 Caenorhabditis elegans
Exon43412   185   II: 2660054-2660238 Caenorhabditis elegans
Exon43413   106   II: 2660283-2660388 Caenorhabditis elegans
Exon43414   102   II: 2660432-2660533 Caenorhabditis elegans
Exon43415   189   II: 2660578-2660766 Caenorhabditis elegans
Exon43416   179   II: 2661379-2661557 Caenorhabditis elegans
Exon43417   488   II: 2661601-2662088 Caenorhabditis elegans
Exon43418   142   II: 2662147-2662288 Caenorhabditis elegans
Exon43419   784   II: 2662331-2663114 Caenorhabditis elegans
Exon43420   187   II: 2663156-2663342 Caenorhabditis elegans
Exon43421   141   II: 2663385-2663525 Caenorhabditis elegans
Exon43422   124   II: 2663576-2663699 Caenorhabditis elegans
Exon43423   183   II: 2663754-2663936 Caenorhabditis elegans
Exon43424   93   II: 2663984-2664076 Caenorhabditis elegans
Exon43425   67   II: 2664121-2664187 Caenorhabditis elegans
Exon43426   301   II: 2664386-2664686 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F22E5.3.1 2659664 2664686 1

1 Sequence

Length
3569

1 Sequence Ontology Term

Identifier Name Description
transcript