WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y25C1A.7c.1 Sequence Name  Y25C1A.7c.1
Length (nt)  1461   Chromosome Location  II: 3062541-3071062
Chromosome . Primary Identifier  II Chromosome Location . Start  3062541
Chromosome Location . End  3071062 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y25C1A.7c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00021294 Y25C1A.7 Y25C1A.7 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y25C1A.7c Y25C1A.7c 1212   II: 3062765-3062974

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y25C1A.7c.1 3062541 3071062 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon44223   434   II: 3062541-3062974 Caenorhabditis elegans
Exon44224   75   II: 3063834-3063908 Caenorhabditis elegans
Exon44225   150   II: 3064365-3064514 Caenorhabditis elegans
Exon44228   63   II: 3065291-3065353 Caenorhabditis elegans
Exon44232   123   II: 3065841-3065963 Caenorhabditis elegans
Exon44235   155   II: 3066388-3066542 Caenorhabditis elegans
Exon44238   199   II: 3068372-3068570 Caenorhabditis elegans
Exon44241   147   II: 3070074-3070220 Caenorhabditis elegans
Exon44244   71   II: 3070543-3070613 Caenorhabditis elegans
Exon44247   44   II: 3071019-3071062 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y25C1A.7c.1 3062541 3071062 -1

1 Sequence

Length
1461

1 Sequence Ontology Term

Identifier Name Description
transcript