WormMine: Gene WBGene00005570

• WormBase Gene ID: WBGene00005570
• Gene Name: sri-58
• Sequence Name: Y27F2A.1
• Organism: Caenorhabditis elegans
• Automated Description: Is affected by several genes including etr-1; lpd-3; and ilc-17.1 based on RNA-seq studies.
• Biotype: SO:0000336
• Genetic Position: II :-7.9269 ±0.023236
• Length (nt): 1543

1 Organism

• Name: Caenorhabditis elegans
• Taxon Id: 6239

1 Synonyms

• Value: WBGene00005570

Genomics

0 Transcripts

Other

0 CDSs

0 RNAi Result

57 Allele

• gk964317
• gk963801
• WBVar02122780
• WBVar02124390
• WBVar02122098
• WBVar02122355
• gk962754
• WBVar02124872
• WBVar02121545
• WBVar02120617
• WBVar00091066
• WBVar02121721
• WBVar02120928
• WBVar01695218
• WBVar01695219
• tm11324
• WBVar02079489
• gk565976
• gk478339
• WBVar00168710
• WBVar00547932
• gk806355
• WBVar01783001
• gk137818
• gk137817
• gk364737
• WBVar00547934
• WBVar01765381
• gk718893
• WBVar02074635

1 Chromosome

• WormBase ID: II
• Organism: Caenorhabditis elegans
• Length (nt): 15279421

1 Chromosome Location

• Feature . Primary Identifier: WBGene00005570
• Start: 3187286
• End: 3188828
• Strand: 1

2 Data Sets

• WormBaseAcedbConverter
• C. elegans genomic annotations (GFF3 Gene)

1 Downstream Intergenic Region

• WormBase ID: intergenic_region_chrII_3188829..3189337
• Length (nt): 509
• Chromosome Location: II: 3188829-3189337
• Organism: Caenorhabditis elegans

8 Expression Clusters

Regulated By Treatment	Description	Algorithm	Primary Identifier
Osmotic stress	Transcripts that showed significantly altered expression with 500 mM salt (NaCl) vs 100 mM salt when food was present	DESeq(version 1.10.1), FDR < 0.05.	WBPaper00050726:OsmoticStress_regulated_Food
	Transcripts that showed significantly increased expression in ogt-1(ok1474) neuronal cells isolated by FACs comparing to in FACs isolated neuronal cells from wild type.	DESeq2, fold change > 2, FDR < 0.05.	WBPaper00066485:ogt-1(ok1474)_upregulated_neuron
	Transcripts that showed significantly increased expression in ilc-17.1(syb5296) comparing to in N2 animals at L4 larva stage.	DESeq2, fold change > 2, FDR < 0.05.	WBPaper00066594:ilc-17.1(syb5296)_upregulated
Starvation	Transcripts that showed significantly altered expression by starvation with 100 mM salt (NaCl)	DESeq(version 1.10.1), FDR < 0.05.	WBPaper00050726:starvation_regulated_LowSalt
	Transcripts that showed significantly increased expression in lpd-3(ok2138) comparing to in N2 animals.	DESeq2, fold change > 4, FDR < 0.05.	WBPaper00064661:lpd-3(ok2138)_upregulated
	Genome-wide analysis of developmental and sex-regulated gene expression profile.	self-organizing map	cgc4489_group_10
	Transcripts that showed significantly decreased expression in adr-1(tm668) comparing to in N2.	DESeq2, p-value < 0.05 and a fold enrichment log2fold > 0.5.	WBPaper00055226:adr-1(tm668)_downregulated
	Transcripts of noncoding genes that showed significantly decreased expression in muscle.	DESeq2 (version 1.24.0). Transcripts with a false-discovery rate adjusted p-value less than 0.05 were considered significantly differentially expressed.	WBPaper00062325:muscle_depleted_noncoding-RNA

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations

• Feature . Primary Identifier: WBGene00005570
• Start: 3187286
• End: 3188828
• Strand: 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

• Length: 1543

1 Sequence Ontology Term