WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T06D4.1b.1 Sequence Name  T06D4.1b.1
Length (nt)  1725   Chromosome Location  II: 3381830-3384025
Chromosome . Primary Identifier  II Chromosome Location . Start  3381830
Chromosome Location . End  3384025 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T06D4.1b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00020290 T06D4.1 T06D4.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T06D4.1b T06D4.1b 963   II: 3382485-3382577

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T06D4.1b.1 3381830 3384025 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon44942   99   II: 3381830-3381928 Caenorhabditis elegans
Exon44949   261   II: 3381974-3382234 Caenorhabditis elegans
Exon44954   155   II: 3382278-3382432 Caenorhabditis elegans
Exon44957   102   II: 3382476-3382577 Caenorhabditis elegans
Exon44961   78   II: 3382626-3382703 Caenorhabditis elegans
Exon44967   78   II: 3382752-3382829 Caenorhabditis elegans
Exon44973   96   II: 3382879-3382974 Caenorhabditis elegans
Exon44979   219   II: 3383024-3383242 Caenorhabditis elegans
Exon44985   96   II: 3383290-3383385 Caenorhabditis elegans
Exon44991   207   II: 3383435-3383641 Caenorhabditis elegans
Exon45001   334   II: 3383692-3384025 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T06D4.1b.1 3381830 3384025 1

1 Sequence

Length
1725

1 Sequence Ontology Term

Identifier Name Description
transcript