WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:T06D4.1b Sequence Name  T06D4.1b
Length (nt)  963   Chromosome Location  II: 3382485-3382577
Chromosome . Primary Identifier  II Chromosome Location . Start  3382485
Chromosome Location . End  3382577
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T06D4.1b

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE41157 T06D4.1, isoform b 36.8 320 Caenorhabditis elegans
 

Other

5 RNAi

WormBase ID
WBRNAi00052637
WBRNAi00018285
WBRNAi00035262
WBRNAi00062358
WBRNAi00066637

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:T06D4.1b 3382485 3382577 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00020290 T06D4.1 T06D4.1 Caenorhabditis elegans

8 Locations


Feature . Primary Identifier
Start End Strand
CDS:T06D4.1b 3382485 3382577 1
CDS:T06D4.1b 3382626 3382703 1
CDS:T06D4.1b 3382752 3382829 1
CDS:T06D4.1b 3382879 3382974 1
CDS:T06D4.1b 3383024 3383242 1
CDS:T06D4.1b 3383290 3383385 1
CDS:T06D4.1b 3383435 3383641 1
CDS:T06D4.1b 3383692 3383787 1

1 Sequence

Length
963

1 Sequence Ontology Term

Identifier Name Description
CDS  

5 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:T06D4.1b.1 T06D4.1b.1 1725   II: 3381830-3384025
Transcript:T06D4.1b.2 T06D4.1b.2 1758   II: 3381830-3384015
Transcript:T06D4.1b.3 T06D4.1b.3 1704   II: 3381830-3384013
Transcript:T06D4.1b.4 T06D4.1b.4 1802   II: 3381834-3384020
Transcript:T06D4.1b.5 T06D4.1b.5 1344   II: 3381972-3383896