WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F18A12.5.1 Sequence Name  F18A12.5.1
Length (nt)  2207   Chromosome Location  II: 3395791-3399312
Chromosome . Primary Identifier  II Chromosome Location . Start  3395791
Chromosome Location . End  3399312 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F18A12.5.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00017554 nep-9 F18A12.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F18A12.5 F18A12.5 2103   II: 3395844-3396017

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F18A12.5.1 3395791 3399312 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

15 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon45034   227   II: 3395791-3396017 Caenorhabditis elegans
Exon45035   174   II: 3396065-3396238 Caenorhabditis elegans
Exon45036   251   II: 3396284-3396534 Caenorhabditis elegans
Exon45037   157   II: 3396594-3396750 Caenorhabditis elegans
Exon45038   110   II: 3396807-3396916 Caenorhabditis elegans
Exon45039   151   II: 3396964-3397114 Caenorhabditis elegans
Exon45040   114   II: 3397612-3397725 Caenorhabditis elegans
Exon45041   183   II: 3397772-3397954 Caenorhabditis elegans
Exon45042   102   II: 3398000-3398101 Caenorhabditis elegans
Exon45043   137   II: 3398144-3398280 Caenorhabditis elegans
Exon45044   97   II: 3398510-3398606 Caenorhabditis elegans
Exon45045   89   II: 3398653-3398741 Caenorhabditis elegans
Exon45046   136   II: 3398797-3398932 Caenorhabditis elegans
Exon45047   195   II: 3398986-3399180 Caenorhabditis elegans
Exon45048   84   II: 3399229-3399312 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F18A12.5.1 3395791 3399312 -1

1 Sequence

Length
2207

1 Sequence Ontology Term

Identifier Name Description
transcript