WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F18A12.4b.1 Sequence Name  F18A12.4b.1
Length (nt)  2065   Chromosome Location  II: 3403852-3406842
Chromosome . Primary Identifier  II Chromosome Location . Start  3403852
Chromosome Location . End  3406842 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F18A12.4b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00017553 nep-8 F18A12.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F18A12.4b F18A12.4b 1944   II: 3403919-3404122

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F18A12.4b.1 3403852 3406842 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon45100   271   II: 3403852-3404122 Caenorhabditis elegans
Exon45102   133   II: 3404168-3404300 Caenorhabditis elegans
Exon45104   92   II: 3404346-3404437 Caenorhabditis elegans
Exon45106   118   II: 3404483-3404600 Caenorhabditis elegans
Exon45108   140   II: 3404650-3404789 Caenorhabditis elegans
Exon45112   102   II: 3404835-3404936 Caenorhabditis elegans
Exon45116   171   II: 3404986-3405156 Caenorhabditis elegans
Exon45122   255   II: 3405464-3405718 Caenorhabditis elegans
Exon45126   163   II: 3405779-3405941 Caenorhabditis elegans
Exon45130   251   II: 3405985-3406235 Caenorhabditis elegans
Exon45134   159   II: 3406282-3406440 Caenorhabditis elegans
Exon45140   210   II: 3406633-3406842 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F18A12.4b.1 3403852 3406842 1

1 Sequence

Length
2065

1 Sequence Ontology Term

Identifier Name Description
transcript