WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C49D10.10.1 Sequence Name  C49D10.10.1
Length (nt)  1979   Chromosome Location  II: 3873511-3877227
Chromosome . Primary Identifier  II Chromosome Location . Start  3873511
Chromosome Location . End  3877227 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C49D10.10.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00016778 nep-3 C49D10.10 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C49D10.10 C49D10.10 1905   II: 3873541-3873714

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C49D10.10.1 3873511 3877227 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon46296   204   II: 3873511-3873714 Caenorhabditis elegans
Exon46297   159   II: 3873764-3873922 Caenorhabditis elegans
Exon46298   251   II: 3874594-3874844 Caenorhabditis elegans
Exon46299   160   II: 3874892-3875051 Caenorhabditis elegans
Exon46300   255   II: 3875098-3875352 Caenorhabditis elegans
Exon46301   117   II: 3875398-3875514 Caenorhabditis elegans
Exon46302   102   II: 3876078-3876179 Caenorhabditis elegans
Exon46303   128   II: 3876237-3876364 Caenorhabditis elegans
Exon46304   109   II: 3876415-3876523 Caenorhabditis elegans
Exon46305   92   II: 3876593-3876684 Caenorhabditis elegans
Exon46306   136   II: 3876729-3876864 Caenorhabditis elegans
Exon46307   238   II: 3876916-3877153 Caenorhabditis elegans
Exon46308   28   II: 3877200-3877227 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C49D10.10.1 3873511 3877227 -1

1 Sequence

Length
1979

1 Sequence Ontology Term

Identifier Name Description
transcript