WormMine

WS296

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:K10G6.3g.1 Sequence Name  K10G6.3g.1
Length (nt)  6409   Chromosome Location  II: 3950377-3972046
Chromosome . Primary Identifier  II Chromosome Location . Start  3950377
Chromosome Location . End  3972046 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
K10G6.3g.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004751 sea-2 K10G6.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:K10G6.3g K10G6.3g 5907   II: 3950377-3950396

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:K10G6.3g.1 3950377 3972046 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

14 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon46462   20   II: 3950377-3950396 Caenorhabditis elegans
Exon46465   75   II: 3951259-3951333 Caenorhabditis elegans
Exon46470   172   II: 3961689-3961860 Caenorhabditis elegans
Exon46474   143   II: 3962202-3962344 Caenorhabditis elegans
Exon46485   450   II: 3962404-3962853 Caenorhabditis elegans
Exon46497   1095   II: 3964186-3965280 Caenorhabditis elegans
Exon46514   102   II: 3965453-3965554 Caenorhabditis elegans
Exon46529   435   II: 3965652-3966086 Caenorhabditis elegans
Exon46538   2832   II: 3966386-3969217 Caenorhabditis elegans
Exon46562   163   II: 3969301-3969463 Caenorhabditis elegans
Exon46580   92   II: 3970029-3970120 Caenorhabditis elegans
Exon46592   203   II: 3970537-3970739 Caenorhabditis elegans
Exon46605   89   II: 3970901-3970989 Caenorhabditis elegans
Exon46620   538   II: 3971509-3972046 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:K10G6.3g.1 3950377 3972046 1

1 Sequence

Length
6409

1 Sequence Ontology Term

Identifier Name Description
transcript