WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:K07D4.7a.1 Sequence Name  K07D4.7a.1
Length (nt)  3792   Chromosome Location  II: 4004914-4016081
Chromosome . Primary Identifier  II Chromosome Location . Start  4004914
Chromosome Location . End  4016081 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
K07D4.7a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00019487 ephx-1 K07D4.7 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:K07D4.7a K07D4.7a 3480   II: 4004914-4005017

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:K07D4.7a.1 4004914 4016081 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon46660   104   II: 4004914-4005017 Caenorhabditis elegans
Exon46661   90   II: 4006742-4006831 Caenorhabditis elegans
Exon46662   210   II: 4006881-4007090 Caenorhabditis elegans
Exon46663   787   II: 4007892-4008678 Caenorhabditis elegans
Exon46665   99   II: 4008762-4008860 Caenorhabditis elegans
Exon46667   94   II: 4009644-4009737 Caenorhabditis elegans
Exon46669   78   II: 4010996-4011073 Caenorhabditis elegans
Exon46673   769   II: 4012450-4013218 Caenorhabditis elegans
Exon46677   853   II: 4013580-4014432 Caenorhabditis elegans
Exon46681   142   II: 4014942-4015083 Caenorhabditis elegans
Exon46685   125   II: 4015250-4015374 Caenorhabditis elegans
Exon46692   441   II: 4015641-4016081 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:K07D4.7a.1 4004914 4016081 1

1 Sequence

Length
3792

1 Sequence Ontology Term

Identifier Name Description
transcript