WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F31D5.5.1 Sequence Name  F31D5.5.1
Length (nt)  5506   Chromosome Location  II: 4194826-4203779
Chromosome . Primary Identifier  II Chromosome Location . Start  4194826
Chromosome Location . End  4203779 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F31D5.5.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00017948 mth-1 F31D5.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F31D5.5 F31D5.5 5274   II: 4195030-4195236

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F31D5.5.1 4194826 4203779 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

20 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon47003   411   II: 4194826-4195236 Caenorhabditis elegans
Exon47004   406   II: 4195514-4195919 Caenorhabditis elegans
Exon47005   216   II: 4195973-4196188 Caenorhabditis elegans
Exon47006   272   II: 4196399-4196670 Caenorhabditis elegans
Exon47007   173   II: 4196724-4196896 Caenorhabditis elegans
Exon47008   319   II: 4196949-4197267 Caenorhabditis elegans
Exon47009   192   II: 4197477-4197668 Caenorhabditis elegans
Exon47010   147   II: 4197714-4197860 Caenorhabditis elegans
Exon47011   118   II: 4197906-4198023 Caenorhabditis elegans
Exon47012   264   II: 4198076-4198339 Caenorhabditis elegans
Exon47013   342   II: 4198449-4198790 Caenorhabditis elegans
Exon47014   528   II: 4198926-4199453 Caenorhabditis elegans
Exon47015   240   II: 4199590-4199829 Caenorhabditis elegans
Exon47016   246   II: 4199880-4200125 Caenorhabditis elegans
Exon47017   270   II: 4200457-4200726 Caenorhabditis elegans
Exon47018   276   II: 4200776-4201051 Caenorhabditis elegans
Exon47019   279   II: 4201296-4201574 Caenorhabditis elegans
Exon47020   276   II: 4201628-4201903 Caenorhabditis elegans
Exon47021   276   II: 4202175-4202450 Caenorhabditis elegans
Exon47022   255   II: 4203525-4203779 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F31D5.5.1 4194826 4203779 -1

1 Sequence

Length
5506

1 Sequence Ontology Term

Identifier Name Description
transcript