WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C16A11.5b.5 Sequence Name  C16A11.5b.5
Length (nt)  2521   Chromosome Location  II: 4223305-4226325
Chromosome . Primary Identifier  II Chromosome Location . Start  4223305
Chromosome Location . End  4226325 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C16A11.5b.5

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00015818 C16A11.5 C16A11.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C16A11.5b C16A11.5b 1341   II: 4224653-4224898

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C16A11.5b.5 4223305 4226325 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon47100   114   II: 4223305-4223418 Caenorhabditis elegans
Exon47122   109   II: 4223480-4223588 Caenorhabditis elegans
Exon47143   257   II: 4223652-4223908 Caenorhabditis elegans
Exon47163   165   II: 4223967-4224131 Caenorhabditis elegans
Exon47186   709   II: 4224190-4224898 Caenorhabditis elegans
Exon47206   324   II: 4224957-4225280 Caenorhabditis elegans
Exon47221   353   II: 4225327-4225679 Caenorhabditis elegans
Exon47236   105   II: 4225730-4225834 Caenorhabditis elegans
Exon47251   75   II: 4225890-4225964 Caenorhabditis elegans
Exon47258   310   II: 4226016-4226325 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C16A11.5b.5 4223305 4226325 1

1 Sequence

Length
2521

1 Sequence Ontology Term

Identifier Name Description
transcript